DNA class - biokit library

Constructors

DNA({required String seq, String? name, String? id, String? desc}): Creates a DNA object.

Properties

desc ↔ String: Returns the sequence description.
getter/setter pairinherited
hashCode → int: The hash code for this object.
no setterinherited
id ↔ String: Returns the sequence ID.
getter/setter pairinherited
len → int: Returns the number of monomers in the sequence.
no setterinherited
name ↔ String: Returns the sequence name.
getter/setter pairinherited
runtimeType → Type: A representation of the runtime type of the object.
no setterinherited
seq → String: Returns the sequence.
no setterinherited
type → String: Returns the sequence type.
no setterinherited

Methods

codonFreq({required String codon}) → int: Returns the frequency of a specified codon.
inherited
combinations({dynamic sorted = false}) → List<String>: Returns every possible combination of this sequence.
inherited
complementary({bool rev = false}) → String: Returns the complementary strand to this sequence.
inherited
dHelixGeoLen() → double: Returns the length (nm) of this sequence if it were in double helical form.
dHelixTurns() → double: Returns the number of turns in this sequence if it were in double helical form.
difference({required Sequence oSeq}) → int: Returns the number of monomer differences between this sequence and oSeq.
inherited
findMotif({required String motif, dynamic overlap = true}) → Map<String, dynamic>: Returns the indices of all motif matches.
inherited
freq({bool norm = false, bool ignoreStopAA = false}) → Map<String, double>: Returns the frequency of each monomer.
inherited
gcContent() → double: Returns the percentage of Guanine and Cytosine nucleotides in this sequence.
inherited
info() → Map<String, dynamic>: Returns information about the this sequence.
inherited
lenMinus({required String monomer}) → int: Returns the length of this sequence with monomer removed.
inherited
noSuchMethod(Invocation invocation) → dynamic: Invoked when a nonexistent method or property is accessed.
inherited
proteins({bool unique = false}) → List<String>: Returns proteins from this sequence.
inherited
report({required String path, required String creator, required String title}) → Future<void>: Generates and saves a DNA analysis report to path.
restrictionSites({int minSiteLen = 4, int maxSiteLen = 8}) → Map<String, List<Map<String, int>>>: Returns the restriction sites of this sequence.
reverse() → String: Returns the reversed version of this sequence.
inherited
sharedMotif({required Sequence oSeq}) → String: Returns the longest shared motif between this sequence and oSeq.
inherited
splice({required String motif}) → String: Returns this sequence with all occurrences of motif removed.
inherited
toFASTA({required String path, required String filename}) → Future<void>: Saves this sequence to a local file in FASTA format.
inherited
toString() → String: Returns a String representation of the info() function.
inherited
tranRatio({required DNA oSeq}) → double: Returns the transition/transversion ratio between this sequence and oSeq.
transcribe({int? startIdx}) → String: Returns the transcribed version of this sequence.
translate({dynamic rev = false, dynamic startIdx = 0}) → Map<String, dynamic>: Returns the translated version of this sequence.
inherited

Operators

operator +(Sequence oSeq) → String: Returns the String sequence combination between this and oSeq.
inherited
operator ==(Object other) → bool: The equality operator.
inherited

Static Methods

random({required int len}) → DNA: Returns a DNA object with a specified length of len.